When I saw "phase" SNPs for the first time, I was confused with the "phase" of a codon. Thanks to two blog posts from The Chromosome Chronicle, I found they were completely irrelevant.
The two posts were:
The two posts were:
http://www.chromosomechronicles.com/2009/09/08/phasing-determining-which-snps-are-inherited-together/
http://www.chromosomechronicles.com/2009/09/30/use-family-snp-data-to-phase-your-own-genome/
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